SMART
A Specific Methylation Analysis and Report Tool for BS-Seq data
| File | Type | Py Version | Uploaded on | Size |
|---|---|---|---|---|
| SMART-BS-Seq-1.4.2.20150517.linux-x86_64.tar.gz | Source | 2.7 | 2015-05-17 | 293KB |
| SMART-BS-Seq-1.4.2.20150517.win-amd64.exe | MS Windows installer | 2.7 | 2015-05-17 | 518KB |
| SMART-BS-Seq-1.0.7.20140803.tar.gz (md5) | Source | 2.7 | 2014-08-03 | 273KB |
| SMART-BS-Seq-1.0.7.20140803.win-amd64.exe (md5) | MS Windows installer | 2.7 | 2014-08-03 | 518KB |
(Only 100kb regions from chr3 and chr6)
| File | Type | Format | Uploaded on | Size |
|---|---|---|---|---|
| BSSeq_fortest.zip | BS-Seq data for example | .wig.gz | 2014-08-03 | 92KB |
| CLoc_hg19_fortest.zip | Cytosine location files for example | .txt.gz | 2014-08-03 | 155KB |
(Convert methylation data file in bed format into wig format used in SMART)
| File | Format | Usage | Uploaded on | Size |
|---|---|---|---|---|
| Code_bed2wig.sh | Shell | Convert bed format to wig format | 2017-02-23 | 4.0kb |
| File | Genome | Assembly | Uploaded on | Size |
|---|---|---|---|---|
| CLoc_human_hg38.zip | Human | hg38 | 2015-12-18 | 4.1G |
| CLoc_human_hg19.zip | Human | hg19 | 2014-08-11 | 3.9G |
| CLoc_mouse_mm10.zip | Mouse | mm10 | 2017-02-01 | 3.7G |
| CLoc_mouse_mm9.zip | Mouse | mm9 | 2014-08-11 | 3.4G |
| Public Resouce | Genome | Assembly |
|---|---|---|
| Human Epigenome Atlas | Human | hg19 |
| NIH Roadmap Epigenomics Mapping Consortium | Human | hg19 |
| NCBI Epigenomics | Multiple | Multiple |
| NGSmethDB | Multiple | Multiple |
| DevMouse | Mouse | mm9 |
| For any help: | you are welcome to write to Hongbo Liu (hongbo919@gmail.com). |
|---|
