A Specific Methylation Analysis and Report Tool for BS-Seq data


Time-stamp: 2015-05-17 14:28:37 Hongbo Liu

SMART Package

File Type Py Version Uploaded on Size
SMART-BS-Seq- Source 2.7 2015-05-17 293KB MS Windows installer 2.7 2015-05-17 518KB
SMART-BS-Seq- (md5) Source 2.7 2014-08-03 273KB (md5) MS Windows installer 2.7 2014-08-03 518KB


Example Data

(Only 100kb regions from chr3 and chr6)

File Type Format Uploaded on Size BS-Seq data for example .wig.gz 2014-08-03 92KB Cytosine location files for example .txt.gz 2014-08-03 155KB


Example Command

(Convert methylation data file in bed format into wig format used in SMART)

File Format Usage Uploaded on Size Shell Convert bed format to wig format 2017-02-23 4.0kb


Cytosine location files

File Genome Assembly Uploaded on Size Human hg38 2015-12-18 4.1G Human hg19 2014-08-11 3.9G Mouse mm10 2017-02-01 3.7G Mouse mm9 2014-08-11 3.4G


Public BS-Seq Data

Public Resouce Genome Assembly
Human Epigenome Atlas Human hg19
NIH Roadmap Epigenomics Mapping Consortium Human hg19
NCBI Epigenomics Multiple Multiple
NGSmethDB Multiple Multiple
DevMouse Mouse mm9


For any help: you are welcome to write to Hongbo Liu (