Dataset downloads
All genomic coordinates are based on Homo sapiens (human) genome assembly GRCh37 (hg19).
Dataset downloadsAll genomic coordinates are based on Homo sapiens (human) genome assembly GRCh37 (hg19).
| 1. Extensive MethyMarks | |||
|---|---|---|---|
| Name | Format | Usage | Download Link |
| Methylation Segments | TXT | Local Analysis | humangenomemethysegments.txt.gz |
| Methylation Segments | SQL | Database | humangenomemethysegments.sql.gz |
| Methylation Segments | BED | Visualization | humangenomemethysegments.bed.gz |
| Methylation Marks | TXT | Local Analysis | humangenomecelltypespecificmethymarks.txt.gz |
| Methylation Marks | SQL | Database | humangenomecelltypespecificmethymarks.sql.gz |
| Super-MethyMarks | TXT | Local Analysis | humangenomecelltypespecificsupermethymarks.txt.gz |
| Super-MethyMarks | SQL | Database | humangenomecelltypespecificsupermethymarks.sql.gz |
| Large-MethyMarks | TXT | Local Analysis | humangenomecelltypespecificlargemethymarks.txt.gz |
| Large-MethyMarks | SQL | Database | humangenomecelltypespecificlargemethymarks.sql.gz |
| 2. Cell-type-specific MethyMarks in each human cell line or tissue | |||
|---|---|---|---|
| Name | Format | Usage | Download Link |
| MethyMarks in all cell-types | TXT | Local Analysis | Combined MethyMarks in 42 cell-types.zip |
| Adipose_Tissue | TXT | Local Analysis | Adipose_Tissue.txt |
| Adrenal_Gland | TXT | Local Analysis | Adrenal_Gland.txt |
| Liver | TXT | Local Analysis | Liver.txt |
| Aorta | TXT | Local Analysis | Aorta.txt |
| Brain_Germinal_Matrix | TXT | Local Analysis | Brain_Germinal_Matrix.txt |
| Breast_Myoepithelial | TXT | Local Analysis | Breast_Myoepithelial.txt |
| Mobilized_CD34_primary_Cells | TXT | Local Analysis | Mobilized_CD34_primary_Cells.txt |
| Esophagus | TXT | Local Analysis | Esophagus.txt |
| Fetal_Muscle_Leg | TXT | Local Analysis | Fetal_Muscle_Leg.txt |
| Fetal_Thymus | TXT | Local Analysis | Fetal_Thymus.txt |
| Gastric | TXT | Local Analysis | Gastric.txt |
| hESC_H1 | TXT | Local Analysis | hESC_H1.txt |
| hESC_H1_BMP4 | TXT | Local Analysis | hESC_H1_BMP4.txt |
| hESC_H1_BMP4_dMesendoderm | TXT | Local Analysis | hESC_H1_BMP4_dMesendoderm.txt |
| hESC_H1_dNPCs | TXT | Local Analysis | hESC_H1_dNPCs.txt |
| hESC_H1_dMesenchymal_Stem_Cells | TXT | Local Analysis | hESC_H1_dMesenchymal_Stem_Cells.txt |
| hESC_H9 | TXT | Local Analysis | hESC_H9.txt |
| hESC_HUES64 | TXT | Local Analysis | hESC_HUES64.txt |
| IMR90 | TXT | Local Analysis | IMR90.txt |
| iPSC_DF19.11 | TXT | Local Analysis | iPSC_DF19.11.txt |
| iPSC_DF6.9 | TXT | Local Analysis | iPSC_DF6.9.txt |
| Keratinocyte_Cells | TXT | Local Analysis | Keratinocyte_Cells.txt |
| Breast_Luminal_Epithelial | TXT | Local Analysis | Breast_Luminal_Epithelial.txt |
| Lung | TXT | Local Analysis | Lung.txt |
| Ovary | TXT | Local Analysis | Ovary.txt |
| Pancreas | TXT | Local Analysis | Pancreas.txt |
| Psoas_Muscle | TXT | Local Analysis | Psoas_Muscle.txt |
| Right_Atrium | TXT | Local Analysis | Right_Atrium.txt |
| Right_Ventricle | TXT | Local Analysis | Right_Ventricle.txt |
| Small_Intestine | TXT | Local Analysis | Small_Intestine.txt |
| Testis_Spermatozoa_Primary_Cells | TXT | Local Analysis | Testis_Spermatozoa_Primary_Cells.txt |
| Spleen | TXT | Local Analysis | Spleen.txt |
| Thymus | TXT | Local Analysis | Thymus.txt |
| hESC_UCSF4star | TXT | Local Analysis | hESC_UCSF4star.txt |
| hESC_dCD56_Ectoderm | TXT | Local Analysis | hESC_dCD56_Ectoderm.txt |
| hESC_dCD56_Mesoderm | TXT | Local Analysis | hESC_dCD56_Mesoderm.txt |
| hESC_dCD184_Endoderm | TXT | Local Analysis | hESC_dCD184_Endoderm.txt |
| Hippocampus_Middle | TXT | Local Analysis | Hippocampus_Middle.txt |
| Left_Ventricle | TXT | Local Analysis | Left_Ventricle.txt |
| Neurosphere_Cortex | TXT | Local Analysis | Neurosphere_Cortex.txt |
| Neurosphere_GanEmi | TXT | Local Analysis | Neurosphere_GanEmi.txt |
| Sigmoid_Colon | TXT | Local Analysis | Sigmoid_Colon.txt |
| 3. Cell-type-specific HypoMarks in each human cell line or tissue | |||
|---|---|---|---|
| Name | Format | Usage | Download Link |
| HypoMarks in all cell-types | TXT | Local Analysis | Combined HypoMarks in 42 cell-types.zip |
| Adipose_Tissue | TXT | Local Analysis | Adipose_Tissue.txt |
| Adrenal_Gland | TXT | Local Analysis | Adrenal_Gland.txt |
| Liver | TXT | Local Analysis | Liver.txt |
| Aorta | TXT | Local Analysis | Aorta.txt |
| Brain_Germinal_Matrix | TXT | Local Analysis | Brain_Germinal_Matrix.txt |
| Breast_Myoepithelial | TXT | Local Analysis | Breast_Myoepithelial.txt |
| Mobilized_CD34_primary_Cells | TXT | Local Analysis | Mobilized_CD34_primary_Cells.txt |
| Esophagus | TXT | Local Analysis | Esophagus.txt |
| Fetal_Muscle_Leg | TXT | Local Analysis | Fetal_Muscle_Leg.txt |
| Fetal_Thymus | TXT | Local Analysis | Fetal_Thymus.txt |
| Gastric | TXT | Local Analysis | Gastric.txt |
| hESC_H1 | TXT | Local Analysis | hESC_H1.txt |
| hESC_H1_BMP4 | TXT | Local Analysis | hESC_H1_BMP4.txt |
| hESC_H1_BMP4_dMesendoderm | TXT | Local Analysis | hESC_H1_BMP4_dMesendoderm.txt |
| hESC_H1_dNPCs | TXT | Local Analysis | hESC_H1_dNPCs.txt |
| hESC_H1_dMesenchymal_Stem_Cells | TXT | Local Analysis | hESC_H1_dMesenchymal_Stem_Cells.txt |
| hESC_H9 | TXT | Local Analysis | hESC_H9.txt |
| hESC_HUES64 | TXT | Local Analysis | hESC_HUES64.txt |
| IMR90 | TXT | Local Analysis | IMR90.txt |
| iPSC_DF19.11 | TXT | Local Analysis | iPSC_DF19.11.txt |
| iPSC_DF6.9 | TXT | Local Analysis | iPSC_DF6.9.txt |
| Keratinocyte_Cells | TXT | Local Analysis | Keratinocyte_Cells.txt |
| Breast_Luminal_Epithelial | TXT | Local Analysis | Breast_Luminal_Epithelial.txt |
| Lung | TXT | Local Analysis | Lung.txt |
| Ovary | TXT | Local Analysis | Ovary.txt |
| Pancreas | TXT | Local Analysis | Pancreas.txt |
| Psoas_Muscle | TXT | Local Analysis | Psoas_Muscle.txt |
| Right_Atrium | TXT | Local Analysis | Right_Atrium.txt |
| Right_Ventricle | TXT | Local Analysis | Right_Ventricle.txt |
| Small_Intestine | TXT | Local Analysis | Small_Intestine.txt |
| Testis_Spermatozoa_Primary_Cells | TXT | Local Analysis | Testis_Spermatozoa_Primary_Cells.txt |
| Spleen | TXT | Local Analysis | Spleen.txt |
| Thymus | TXT | Local Analysis | Thymus.txt |
| hESC_UCSF4star | TXT | Local Analysis | hESC_UCSF4star.txt |
| hESC_dCD56_Ectoderm | TXT | Local Analysis | hESC_dCD56_Ectoderm.txt |
| hESC_dCD56_Mesoderm | TXT | Local Analysis | hESC_dCD56_Mesoderm.txt |
| hESC_dCD184_Endoderm | TXT | Local Analysis | hESC_dCD184_Endoderm.txt |
| Hippocampus_Middle | TXT | Local Analysis | Hippocampus_Middle.txt |
| Left_Ventricle | TXT | Local Analysis | Left_Ventricle.txt |
| Neurosphere_Cortex | TXT | Local Analysis | Neurosphere_Cortex.txt |
| Neurosphere_GanEmi | TXT | Local Analysis | Neurosphere_GanEmi.txt |
| Sigmoid_Colon | TXT | Local Analysis | Sigmoid_Colon.txt |
| 4. Cell-type-specific HyperMarks in each human cell line or tissue | |||
|---|---|---|---|
| Name | Format | Usage | Download Link |
| HyperMarks in all cell-types | TXT | Local Analysis | Combined HyperMarks in 42 cell-types.zip |
| Adipose_Tissue | TXT | Local Analysis | Adipose_Tissue.txt |
| Adrenal_Gland | TXT | Local Analysis | Adrenal_Gland.txt |
| Liver | TXT | Local Analysis | Liver.txt |
| Aorta | TXT | Local Analysis | Aorta.txt |
| Brain_Germinal_Matrix | TXT | Local Analysis | Brain_Germinal_Matrix.txt |
| Breast_Myoepithelial | TXT | Local Analysis | Breast_Myoepithelial.txt |
| Mobilized_CD34_primary_Cells | TXT | Local Analysis | Mobilized_CD34_primary_Cells.txt |
| Esophagus | TXT | Local Analysis | Esophagus.txt |
| Fetal_Muscle_Leg | TXT | Local Analysis | Fetal_Muscle_Leg.txt |
| Fetal_Thymus | TXT | Local Analysis | Fetal_Thymus.txt |
| Gastric | TXT | Local Analysis | Gastric.txt |
| hESC_H1 | TXT | Local Analysis | hESC_H1.txt |
| hESC_H1_BMP4 | TXT | Local Analysis | hESC_H1_BMP4.txt |
| hESC_H1_BMP4_dMesendoderm | TXT | Local Analysis | hESC_H1_BMP4_dMesendoderm.txt |
| hESC_H1_dNPCs | TXT | Local Analysis | hESC_H1_dNPCs.txt |
| hESC_H1_dMesenchymal_Stem_Cells | TXT | Local Analysis | hESC_H1_dMesenchymal_Stem_Cells.txt |
| hESC_H9 | TXT | Local Analysis | hESC_H9.txt |
| hESC_HUES64 | TXT | Local Analysis | hESC_HUES64.txt |
| IMR90 | TXT | Local Analysis | IMR90.txt |
| iPSC_DF19.11 | TXT | Local Analysis | iPSC_DF19.11.txt |
| iPSC_DF6.9 | TXT | Local Analysis | iPSC_DF6.9.txt |
| Keratinocyte_Cells | TXT | Local Analysis | Keratinocyte_Cells.txt |
| Breast_Luminal_Epithelial | TXT | Local Analysis | Breast_Luminal_Epithelial.txt |
| Lung | TXT | Local Analysis | Lung.txt |
| Ovary | TXT | Local Analysis | Ovary.txt |
| Pancreas | TXT | Local Analysis | Pancreas.txt |
| Psoas_Muscle | TXT | Local Analysis | Psoas_Muscle.txt |
| Right_Atrium | TXT | Local Analysis | Right_Atrium.txt |
| Right_Ventricle | TXT | Local Analysis | Right_Ventricle.txt |
| Small_Intestine | TXT | Local Analysis | Small_Intestine.txt |
| Testis_Spermatozoa_Primary_Cells | TXT | Local Analysis | Testis_Spermatozoa_Primary_Cells.txt |
| Spleen | TXT | Local Analysis | Spleen.txt |
| Thymus | TXT | Local Analysis | Thymus.txt |
| hESC_UCSF4star | TXT | Local Analysis | hESC_UCSF4star.txt |
| hESC_dCD56_Ectoderm | TXT | Local Analysis | hESC_dCD56_Ectoderm.txt |
| hESC_dCD56_Mesoderm | TXT | Local Analysis | hESC_dCD56_Mesoderm.txt |
| hESC_dCD184_Endoderm | TXT | Local Analysis | hESC_dCD184_Endoderm.txt |
| Hippocampus_Middle | TXT | Local Analysis | Hippocampus_Middle.txt |
| Left_Ventricle | TXT | Local Analysis | Left_Ventricle.txt |
| Neurosphere_Cortex | TXT | Local Analysis | Neurosphere_Cortex.txt |
| Neurosphere_GanEmi | TXT | Local Analysis | Neurosphere_GanEmi.txt |
| Sigmoid_Colon | TXT | Local Analysis | Sigmoid_Colon.txt |
| 5. Supplementary Data for NAR paper describing DNA methylation marks | |||
|---|---|---|---|
| Name | Format | Usage | Download Link |
| Supplementary Tables and Figures | Pdf / Excel | Local Analysis | Supplementary Tables and Figures.zip |
